Resume

dr hab. inż. Przemysław Biecek

I am interested in methodology (explainable artificial intelligence) and applications (computational medicine/biology) of machine learning. I work as associate professor at Warsaw University of Technology. My background is in mathematical statistics and software engineering. I lead group MI2DataLab of mathematicians and computer scientists that love to play with data

Find more about my projects at Google Scholar or GitHub and more about our group at our webpage or GitHub.

After hours I'm working on Data Literacy project BetaBit.

Education

2013

Habilitation in Medical Statistics
Nałecz Institute of Biocybernetics and Biomedical Engineering, Polish Academy of Sciences
Topic: Linear models with fixed, random and mixed effects with appliactions in biology and medicine.

2003-2007

Ph. D. Studies in Mathematical Statistics, specialization: biostatistics
The Faculty of Fundamental Problems of Technology, Wrocław University of Technology
Advisor: prof. dr hab. Witold Klonecki.
PhD thesis: Multiple Testing Procedures for Hierarchically Related Hypotheses
[download]

2006-2008

Ph. D. Studies in Biotechnology (unfinished)
The Faculty of Biotechnology, University of Wrocław
Advisor: prof. dr hab. Stanisław Cebrat.

1998-2003

M. Sc. Studies in Computer Science, Specialization: Software Engineering
The Faculty of Computer Science and Management, Wrocław University of Technology
Master’s thesis: Generating system prototypes from UML sequence diagrams.

1998-2003

M. Sc. Studies in Mathematics, Specialization: Statistics
The Faculty of Fundamental Problems of Technology, Wrocław University of Technology
Master’s thesis: Using multiple hypothesis testing in genetic microarray research.

Work

2014 - ...

Professor at Faculty of Mathematics and Information Science,
Group of Advanced Bio- Medical Applications of Statistics and Machine Learning
Institute of CAD/CAM systems and Computer-assisted Medicine
Warsaw University of Technology
[webpage], [GitHub]

2008 - ...

Assistant professor at Faculty of Mathematics, Informatics, and Mechanics
Group of mathematical statistics,
Institute of Applied Mathematics and Mechanics,
University of Warsaw

2013 - 2015

Assistant professor at Interdisciplinary Centre for Mathematical and Computational Modelling,
University of Warsaw

2007 - 2008

Assistant professor at Mathematical Institute,
Group of Mathematicsl Statistics,
Polish Academy of Sciences

2007 - 2008

Assistant professor at Department of Genomics,
The Faculty of Biotechnology
University of Wrocław

Research visits

2018

Research visit at Nanyang Technological University (Singapore).
Collaboration with prof. Janusz Hołyst.

2014, 2015

Research visits at Auckland University (New Zeland).
Collaboration with prof. Ross Ihaka.

2010, 2011, 2017

Research visits at Hasselt University (Belgium).
Collaboration with prof. Tomasz Burzykowski.

2007

Research visit at Toronto University (Canada).
Collaboration with prof. Rafał Kustra and dr Adam Zagdanski.

2004, 2005

Research visits at Vienna University (Austria).
Collaboration with prof. Andreas Futschik.

2004

Research visit at Purdue University (USA).
Collaboration with prof. Rebecca Doerge and dr Małgorzata Bogdan.

Books

2008, 2011, 2014, 2017

Przewodnik po pakiecie R (The Hitchhiker's Guide to R)
Publisher: GiS, 400 pages
[www], [GitHub]

2014, 2016

Zbiór Esejów o sztuce wizualizacji danych (Essays about Data Visualisation)
Publisher: SmarterPoland, 220 pages
[www], [GitHub]

2011, 2014

Analiza danych w programie R. Modele liniowe i mieszane (Data Analysis with R, linear and mixed models)
Publisher: PWN, 300 pages
[www]

Publications (from Web of Knowledge)

2018

Drozd-Sokolowska J, Madry K, Waszczuk-Gajda A, Biecek P, Szwedyk P, Budziszewska K, Razny M, Dutka M, Obara A, Wasilewska E, Lewandowski K, Piekarska A, Bober G, Krzemien H, Stella-Holowiecka B, Kapelko-Slowik K, Sawicki W, Paszkowska-Kowalewska M, Machowicz R, Dwilewicz-Trojaczek J (2018). “Atypical chronic myeloid leukaemia: A case of an orphan disease-A multicenter report by the Polish Adult Leukemia Group.” HEMATOLOGICAL ONCOLOGY 36(3), pp. 570-575. ISSN 0278-0232, doi:10.1002/hon.2501

Donizy P, Kaczorowski M, Biecek P, Halon A, Matkowski R (2018). “Nuclear pseudoinclusions in melanoma cells: prognostic fact or artifact?” PATHOLOGY INTERNATIONAL, 68(2), pp. 117-122. ISSN 1320-5463, 10.1111/pin.12629

Rudzki P, Kaza M, Biecek P (2018). “Extended 3D and 4D cumulative plots for evaluation of unmatched incurred sample reanalysis” BIOANALYSIS, 10(3), pp. 153-162. ISSN 1757-6180, 10.4155/bio-2017-0210

2017

Donizy P, Biecek P, Halon A, Maciejczyk A, Matkowski R (2017). “Nucleoli cytomorphology in cutaneous melanoma cells - a new prognostic approach to an old concept” DIAGNOSTIC PATHOLOGY, 12. ISSN 11746-1596, 10.1186/s13000-017-0675-7

Szarzynska-Zawadzka B, Kunz J, Kosmalska M, Zdon K, Biecek P, Bandapalli O, Reddy L, Kowalczyk J, Szczepanski T, Kulozik A, Witt A, Dawidowska M (2017). “PTEN Alterations Are Related to Unfavorable Prognosis in Children with T-Cell Acute Lymphoblastic Leukemia Treated According to ALL IC-BFM Protocols” BLOOD, 130(1). ISSN 0006-4971

Biecek P, Kosinski M (2017). “archivist: An R Package for Managing, Recording and Restoring Data Analysis Results” JOURNAL OF STATISTICAL SOFTWARE, 82(11) pp. 1-28. ISSN 1548-7660, 10.18637/jss.v082.i11

Oleksiewicz U, Gladych M, Raman A, Heyn H, Mereu E, Chlebanowska P, Andrzejewska A, Sozanska B, Samant N, Fak K, Auguscik P, Kosinski M, Wroblewska J, Tomczak K, Kulcenty K, Ploski R, Biecek P, Esteller M, Shah P, Rai K, Wiznerowicz M (2017). “TRIM28 and Interacting KRAB-ZNFs Control Self-Renewal of Human Pluripotent Stem Cells through Epigenetic Repression of Pro-differentiation Genes” STEM CELL REPORTS, 9(6) pp. 2065-2080. ISSN 2213-6711, 10.1016/j.stemcr.2017.10.031

Szynglarewicz B, Kasprzak P, Donizy P, Biecek P, Halon A, Matkowski R (2017). “Epithelial-mesenchymal transition inducer Snail1 and invasive potential of intraductal breast cancer” JOURNAL OF SURGICAL ONCOLOGY, 116(6) pp. 696-705. ISSN 0022-4790, 10.1002/jso.24708

Caro D, Biecek P (2017). “intsvy: An R Package for Analyzing International Large-Scale Assessment Data” JOURNAL OF STATISTICAL SOFTWARE, 81(7) pp. 1-44. ISSN 1548-7660, 10.18637/jss.v081.i07

Tracz-Gaszewska Z, Klimczak M, Biecek P, Herok M, Kosinski M, Olszewski M, Czerwinska P, Wiech M, Wiznerowicz M, Zylicz A, Zylicz M, Wawrzynow B (2017). “Molecular chaperones in the acquisition of cancer cell chemoresistance with mutated TP53 and MDM2 up-regulation” ONCOTARGET, 8(47) pp. 82123-82143. ISSN 1949-2553, 10.18632/oncotarget.18899

Donizy Z, Kaczorowski M, Biecek P, Halon A, Matkowski R (2017). “Nucleoli and nuclear pseudoinclusions in cutaneous melanoma cells a new prognostic approach to an old concept” VIRCHOWS ARCHIV, 471(1) pp. S117.

Klimczak M, Czerwinska P, Mazurek S, Sozanska B, Biecek P, Mackiewicz A, Wiznerowicz M (2017). “TRIM28 epigenetic corepressor is indispensable for stable induced pluripotent stem cell formation” STEM CELL RESEARCH, 23(1) pp. 163-172. ISSN 1876-7753, 10.1016/j.scr.2017.07.012

Rudzki P, Biecek P, Kaza M (2017). “Comprehensive graphical presentation of data from incurred sample reanalysis” BIOANALYSIS, 9(12) pp. 947-956. ISSN 1757-6180, 10.4155/bio-2017-0038

Lahti L, Huovari J, Kainu M, Biecek P (2017). “Retrieval and Analysis of Eurostat Open Data with the eurostat Package” R JOURNAL, 9(1) pp. 385-392. ISSN 2073-4859

Archacki R, Yatusevich R, Buszewicz D, Krzyczmonik K, Patryn J, Iwanicka-Nowicka R, Biecek P, Wilczynski B, Koblowska M, Jerzmanowski A, Swiezewski S (2017). “Arabidopsis SWI/SNF chromatin remodeling complex binds both promoters and terminators to regulate gene expression” NUCLEIC ACIDS RESEARCH, 45(6) pp. 3116-3129. ISSN 0305-1048, 10.1093/nar/gkw1273

Czerwinska P, Shah P, Tomczak K, Klimczak M, Mazurek S, Sozanska B, Biecek P, Korski K, Filas V, Mackiewicz A, Andersen J, Wiznerowicz M (2017). “TRIM28 multi-domain protein regulates cancer stem cell population in breast tumor development” ONCOTARGET, 8(1) pp. 863-882. ISSN 1949-2553, 10.18632/oncotarget.13273

Ransey E, Bjorkbom A, Lelyveld V, Biecek P, Pantano L, Szostak J, Sliz P (2017). “Comparative analysis of LIN28-RNA binding sites identified at single nucleotide resolution” RNA BIOLOGY, 14(12) pp. 1756-1765. ISSN 1547-62863, 10.1080/15476286.2017.1356566

Nowaczewska W, Lapicka U, Cieslik A, Biecek P (2017). “The relationship of cranial, orbital and nasal cavity size with the morphology of the supraorbital region in modern Homo sapiens” ANTHROPOLOGISCHER ANZEIGER, 74(3) pp. 247-262. ISSN 0003-5548

2016

Donizy P, Biecek P, Halon A and Matkowski R (2016). “BILLCD8 - A Multivariable Survival Model as a Simple and Clinically Useful Prognostic Tool to Identify High-risk Cutaneous Melanoma Patients.” ANTICANCER RESEARCH, 36(9), pp. 4739-4747. ISSN 0250-7005, doi: 10.21873/anticanres.11029.

Borgonovi F and Biecek P (2016). “An international comparison of students' ability to endure fatigue and maintain motivation during a low-stakes test.” LEARNING AND INDIVIDUAL DIFFERENCES, 49, pp. 128-137. ISSN 1041-6080, doi: 10.1016/j.lindif.2016.06.001.

Donizy P, Biecek P, Kaczorowski M, Halon A, Maciejczyk A and Matkowski R (2016). “Contrary effect of two types of spatial distribution (diffuse versus marginal) of CD8-positive lymphocytes on clinical outcome in melanoma patients” Int J Clin Exp Pathol, 9 (8) pp. 8415-8423. doi:10.1007/s12035-015-9625-0.

Kondratiuk I, Łęski S, Urbańska M, Biecek P, Devijver H, Lechat B, Van Leuven F, Kaczmarek L and Jaworski T (2016). “GSK-3β and MMP-9 Cooperate in the Control of Dendritic Spine Morphology” Molecular Neurobiology, pp. 1-12. ijcep/0029449.

Szynglarewicz B, Kasprzak P, Donizy P, Biecek P, Halon A and Matkowski R (2016). “Ductal carcinoma in situ on stereotactic biopsy of suspicious breast microcalcifications: Expression of SPARC (Secreted Protein, Acidic and Rich in Cysteine) can predict postoperative invasion” Journal of Surgical Oncology, 114, (5) pp. 548-556. doi: 10.1002/jso.24373.

Drozd-Sokołowskaa J., Sokołowski J., Biecek P, Niemczyk K, Basaka G and Wiktor-Jędrzejczaka G (2016) “Rhinosinusitis in Acute Leukemia Patients Undergoing Allogeneic Stem Cell Transplantation—A Single-Center Experience” Transplantation Proceedings, 48, (5) pp. 1797–1801. doi: 10.1016/j.transproceed.2016.03.013.

Donizy P, Kaczorowski M, Biecek P, Halon A, Szkudlarek T and Matkowski R (2016) “Golgi-Related Proteins GOLPH2 (GP73/GOLM1) and GOLPH3 (GOPP1/MIDAS) in Cutaneous Melanoma: Patterns of Expression and Prognostic Significance” Int. J. Mol. Sci., 17, (10) pp. 1619. doi:10.3390/ijms17101619.

Szynglarewicz B, Kasprzak P, Biecek P, Halon A and Matkowski R (2016). “Screen-detected ductal carcinoma in situ found on stereotactic vacuum-assisted biopsy of suspicious microcalcifications without mass: radiological-histological correlation.” RADIOLOGY AND ONCOLOGY, 50(2), pp. 145-152. ISSN 1318-2099, doi: 10.1515/raon-2016-0020.

Dobrzynska E, Rymaszewska J, Biecek P and Kiejna A (2016). “Do Mental Health Outpatient Services Meet Users' Needs? Trial to Identify Factors Associated with Higher Needs for Care.” COMMUNITY MENTAL HEALTH JOURNAL, 52(4), pp. 472-478. ISSN 0010-3853, doi: 10.1007/s10597-015-9923-z.

2015

Wrzosek M, Sokal M, Sawicka A, Wlodarczyk M, Glowala M, Wrzosek M, Kosior M, Talalaj M, Biecek P and Nowicka G (2015). “IMPACT OF OBESITY AND NITRIC OXIDE SYNTHASE GENE G894T POLYMORPHISM ON ESSENTIAL HYPERTENSION.” JOURNAL OF PHYSIOLOGY AND PHARMACOLOGY, 66(5), pp. 681-689. ISSN 0867-5910.

Piotrowicz K, Palkowska E, Bartnikowska E, Krzesinski P, Stanczyk A, Biecek P, Skrobowski A and Gielerak G (2015). “Self-reported health-related behaviors and dietary habits in patients with metabolic syndrome.” CARDIOLOGY JOURNAL, 22(4), pp. 413-420. ISSN 1897-5593, doi: 10.5603/CJ.a2015.0020.

Stachowska-Pietka J, Biecek P, Paniagua R, Ventura M, Avila-Diaz M, Prado-Uribe C, Mora C, Garcia-Lopez E, Lindholm B and Waniewski J (2015). “FACTORS ASSOCIATED TO ULTRAFILTRAFILTRATION IN PERITONEAL DIALYSIS.” NEPHROLOGY DIALYSIS TRANSPLANTATION, 30(3). ISSN 0931-0509, doi: 10.1093/ndt/gfv180.44, 52nd Congress of the European-Renal-Association-European-Dialysis-and-Transplant-Assocation, London, ENGLAND, MAY 28-31, 2015.

Donizy P, Biecek P, Halon A and Matkowski R (2015). “BILLCD8 - A multivariable survival model based on detailed histopathological parameters of primary tumors in cutaneous melanoma patients.” INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE, 36(1), pp. S40. ISSN 1107-3756.

Nowaczewska W, Kuzminski L and Biecek P (2015). “Morphological Relationship Between the Cranial and Supraorbital Regions in Homo sapiens.” AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY, 156(1), pp. 110-124. ISSN 0002-9483, doi: 10.1002/ajpa.22632.

2014

Mazanowska O, Zabinska M, Koscielska-Kasprzak K, Kaminska D, Krajewska M, Banasik M, Madziarska K, Zmonarski SC, Chudoba P, Biecek P, Boratynska M and Klinger M (2014). “Increased Plasma Matrix Metalloproteinase-2 (MMP-2), Tissue Inhibitor of Proteinase-1 (TIMP-1), TIMP-2, and Urine MMP-2 Concentrations Correlate With Proteinuria in Renal Transplant Recipients.” TRANSPLANTATION PROCEEDINGS, 46(8), pp. 2636-2639. ISSN 0041-1345, doi: 10.1016/j.transproceed.2014.08.034, 11th Congress of the Polish-Transplantation-Society, Bydgoszcz, POLAND, NOV 28-30, 2013.

Mazanowska O, Zabinska M, Koscielska-Kasprzak K, Kaminska D, Banasik M, Krajewska M, Madziarska K, Zmonarski SC, Chudoba P, Biecek P, Boratynska M and Klinger M (2014). “Advanced Age of Renal Transplant Recipients Correlates With Increased Plasma Concentrations of Interleukin-6, Chemokine Ligand 2 (CCL2), and Matrix Metalloproteinase 2, and Urine Concentrations of CCL2 and Tissue Inhibitor of Metalloproteinase 1.” TRANSPLANTATION PROCEEDINGS, 46(8), pp. 2640-2643. ISSN 0041-1345, doi: 10.1016/j.transproceed.2014.08.030, 11th Congress of the Polish-Transplantation-Society, Bydgoszcz, POLAND, NOV 28-30, 2013.

Sobkowiak A, Jonczyk M, Jarochowska E, Biecek P, Trzcinska-Danielewicz J, Leipner J, Fronk J and Sowinski P (2014). “Genome-wide transcriptomic analysis of response to low temperature reveals candidate genes determining divergent cold-sensitivity of maize inbred lines.” PLANT MOLECULAR BIOLOGY, 85(3), pp. 317-331. ISSN 0167-4412, doi: 10.1007/s11103-014-0187-8.

Baurska H, Kielbinski M, Biecek P, Haus O, Jazwiec B, Kutner A and Marcinkowska E (2014). “Monocytic differentiation induced by side-chain modified analogs of vitamin D in ex vivo cells from patients with acute myeloid leukemia.” LEUKEMIA RESEARCH, 38(5), pp. 638-647. ISSN 0145-2126, doi: 10.1016/j.leukres.2014.03.009.

2013

Matsumoto H, Podgorska A, Abramowska M, Wrzosek M, Jakubczyk A, Matsumoto H, Klimkiewicz A, Wnorowska A, Tyce M, Zwierzchowska K, Biecek P and Wojnar M (2013). “SIGNIFICANCE OF ACE, 5HTTLPR AND BDNF GENES INTERACTIONS AS PREDICTORS OF THE RISK OF THE ONSET OF ALCOHOL PROBLEMS. DATA FROM POLISH SAMPLE OF ALCOHOL-DEPENDENT PATIENTS.” ALCOHOL AND ALCOHOLISM, 48(1), pp. 32. ISSN 0735-0414.

Libman-Sokolowska M, Matsumoto H, Sygitowicz G, Filipek A, Piwowarska J, Dzikliska A, Radziwo-Zaleska M, Ryszewska-Pokrasniewicz B, Skalski M, Naruszewicz M, Biecek P, Tyce M, Zwierzchowska K, Nasierowski T, Sitkiewicz D and Wojnar M (2013). “COMPARISON OF BLOOD BDNF LEVEL IN PATIENTS WITH ALCOHOL-DEPENDENCE, DEPRESSION AND HEALTHY CONTROLS.” ALCOHOL AND ALCOHOLISM, 48(1), pp. 54. ISSN 0735-0414.

Slusarczyk M, Ochocka A and Biecek P (2013). “Prevalence of kairomone-induced diapause in Daphnia magna from habitats with and without fish.” HYDROBIOLOGIA, 715(1), pp. 225-232. ISSN 0018-8158, doi: 10.1007/s10750-013-1552-3.

Mazanowska O, Kaminska D, Krajewska M, Banasik M, Zabinska M, Koscielska-Kasprzak K, Biecek P, Chudoba P, Patrzalek D, Boratynska M and Klinger M (2013). “Increased Plasma Tissue Inhibitors of Metalloproteinase Concentrations as Negative Predictors Associated With Deterioration of Kidney Allograft Function Upon Long-Term Observation.” TRANSPLANTATION PROCEEDINGS, 45(4), pp. 1458-1461. ISSN 0041-1345, doi: 10.1016/j.transproceed.2013.02.109, Berlin Symposium on Xenotransplantation / 24th International Congress of the Transplantation-Society (TTS), Robert Koch Inst, Berlin, GERMANY, JUL 13-19, 2012.

2012

Biecek P, Szczurek E, Vingron M and Tiuryn J (2012). “The R Package bgmm: Mixture Modeling with Uncertain Knowledge.” JOURNAL OF STATISTICAL SOFTWARE, 47(3), pp. 1-31. ISSN 1548-7660.

Kustrzycki W, Rymaszewska J, Malcher K, Szczepanska-Gieracha J and Biecek P (2012). “Risk factors of depressive and anxiety symptoms 8 years after coronary artery bypass grafting.” EUROPEAN JOURNAL OF CARDIO-THORACIC SURGERY, 41(2), pp. 302-306. ISSN 1010-7940, doi: 10.1016/j.ejcts.2011.06.028.

Halon A, Donizy P, Biecek P, Rudno-Rudzinska J, Kielan W and Matkowski R (2012). “HER-2 Expression in Immunohistochemistry Has No Prognostic Significance in Gastric Cancer Patients.” SCIENTIFIC WORLD JOURNAL. ISSN 1537-744X, doi: 10.1100/2012/941259.

2011

Jonczyk M, Sobkowiak A, Siedlecki P, Biecek P, Trzcinska-Danielewicz J, Tiuryn J, Fronk J and Sowinski P (2011). “Rhythmic Diel Pattern of Gene Expression in Juvenile Maize Leaf.” PLOS ONE, 6(8). ISSN 1932-6203, doi: 10.1371/journal.pone.0023628.

Ordak M, Wozny E, Matsumoto HZ, Abramowska M, Dziklinska A, Sygitowicz G, Biecek P and Sitkiewicz D (2011). “Biomarkers of alcohol abuse: beta-hexosaminidase activity in serum and urine in a sample of students of Medical University of Warsaw.” THERAPEUTIC DRUG MONITORING, 33(4), pp. 497. ISSN 0163-4356, 12th International Congress of Therapeutic Drug Monitoring and Clinical Toxicology, Stuttgart, GERMANY, OCT 02-06, 2011.

Szczurek E, Markowetz F, Gat-Viks I, Biecek P, Tiuryn J and Vingron M (2011). “Deregulation upon DNA damage revealed by joint analysis of context-specific perturbation data.” BMC BIOINFORMATICS, 12. ISSN 1471-2105, doi: 10.1186/1471-2105-12-249.

Dojer N, Biecek P and Tiuryn J (2011). “Bi-Billboard: Symmetrization and Careful Choice of Informant Species Results in Higher Accuracy of Regulatory Element Prediction.” JOURNAL OF COMPUTATIONAL BIOLOGY, 18(6), pp. 809-819. ISSN 1066-5277, doi: 10.1089/cmb.2010.0299.

Gisterek IJ, Halon A, Staszek-Szewczyk U, Matkowski R, Szelachowska J, Biecek P, Lata E, Szewczyk K and Kornafel J (2011). “Prognostic role of VEGFR1-3 immunoreactivity in breast cancer patients.” BREAST, 20(1), pp. S40. ISSN 0960-9776.

2010

Gisterek I, Matkowski R, Lacko A, Sedlaczek P, Szewczyk K, Biecek P, Halon A, Staszek U, Szelachowska J, Pudelko M, Bebenek M, Harlozinska-Szmyrka A and Kornafel J (2010). “Serum Vascular Endothelial Growth Factors A, C and D in Human Breast Tumors.” PATHOLOGY \& ONCOLOGY RESEARCH, 16(3), pp. 337-344. ISSN 1219-4956, doi: 10.1007/s12253-009-9211-8.

Szczurek E, Biecek P, Tiuryn J and Vingron M (2010). “Introducing Knowledge into Differential Expression Analysis.” JOURNAL OF COMPUTATIONAL BIOLOGY, 17(8), pp. 953-967. ISSN 1066-5277, doi: 10.1089/cmb.2010.0034.

Zynek-Litwin M, Kuzniar J, Marchewka Z, Kopec W, Kusztal M, Patrzalek D, Biecek P and Klinger M (2010). “Plasma and urine leukocyte elastase-alpha(1)protease inhibitor complex as a marker of early and long-term kidney graft function.” NEPHROLOGY DIALYSIS TRANSPLANTATION, 25(7), pp. 2346-2351. ISSN 0931-0509, doi: 10.1093/ndt/gfq041.

Gisterek I, Matkowski R, Suder E, Halon A, Szelachowska J, Lata E, Lacko A, Biecek P and Kornafel J (2010). “Correlation between hepatocyte growth factor receptor and vascular endothelial growth factor-A in breast carcinoma.” FOLIA HISTOCHEMICA ET CYTOBIOLOGICA, 48(1), pp. 78-83. ISSN 0239-8508, doi: 10.2478/v10042-010-0016-0.

2009

Biecek P (2009). “Conference Review: WZUR(2.0) - The Second Meeting of Polish R Users.” R JOURNAL, 1(2), pp. 67. ISSN 2073-4859.

Falkiewicz K, Boratynska M, Speichert-Bidzinska B, Magott-Procelewska M, Biecek P, Patrzalek D and Klinger M (2009). “1,25-Dihydroxyvitamin D Deficiency Predicts Poorer Outcome After Renal Transplantation.” TRANSPLANTATION PROCEEDINGS, 41(8), pp. 3002-3005. ISSN 0041-1345, doi: 10.1016/j.transproceed.2009.07.087, 9th Congress of the Polish-Transplantation-Society, Cracow, POLAND, MAY 16, 2009.

Magott-Procelewska M, Boratynska M, Janczak D, Chudoba P, Patrzalek D, Biecek P and Klinger M (2009). “Estimated Glomerular Filtration Rate Evolution Between 6 and 24 Months Predicts Long-Term Kidney Transplant Survival Among Patients With Inferior Graft Function.” TRANSPLANTATION PROCEEDINGS, 41(8), pp. 3028-3032. ISSN 0041-1345, doi: 10.1016/j.transproceed.2009.07.105, 9th Congress of the Polish-Transplantation-Society, Cracow, POLAND, MAY 16, 2009.

Falkiewicz K, Boratynska M, Zmonarski SC, Milewicz A, Patrzalek D, Biecek P and Klinger M (2009). “Evolution of Bone Disease at 2 Years After Transplantation: A Single-Center Study.” TRANSPLANTATION PROCEEDINGS, 41(8), pp. 3063-3066. ISSN 0041-1345, doi: 10.1016/j.transproceed.2009.09.041, 9th Congress of the Polish-Transplantation-Society, Cracow, POLAND, MAY 16, 2009.

Falkiewicz K, Boratynska M, Zmonarski SC, Milewicz A, Patrzalek D, Biecek P and Klinger M (2009). “EVOLUTION OF BONE DISEASE IN 2 YEARS AFTER TRANSPLANTATION; A PROSPECTIVE SINGLE CENTER STUDY.” TRANSPLANT INTERNATIONAL, 22, pp. 180. ISSN 0934-0874.

Laszkiewicz A, Biecek P, Bonkowska K and Cebrat S (2009). “Evolution of the age-structured populations and demography.” In Lachowicz M and Miekisz J (eds.), FROM GENETICS TO MATHEMATICS, volume 79 series Series on Advances in Mathematics for Applied Sciences, pp. 35-70. ISBN 978-981-238-724-0, Workshop on From Genetics to Mathematics, Zbaszyn, POLAND, OCT 18-20, 2007.

2008

Bogdan M, Frommlet F, Biecek P, Cheng R, Ghosh JK and Doerge RW (2008). “Extending the Modified Bayesian Information Criterion (mBIC) to Dense Markers and Multiple Interval Mapping.” BIOMETRICS, 64(4), pp. 1162-1169. ISSN 0006-341X, doi: 10.1111/j.1541-0420.2008.00989.x.

Biecek P and Cebrat S (2008). “Why Y chromosome is shorter and women live longer?” EUROPEAN PHYSICAL JOURNAL B, 65(1), pp. 149-153. ISSN 1434-6028, doi: 10.1140/epjb/e2008-00325-4.

Zawierta M, Waga W, Mackiewicz D, Biecek P and Cebrat S (2008). “Phase transition in sexual reproduction and biological evolution.” INTERNATIONAL JOURNAL OF MODERN PHYSICS C, 19(6), pp. 917-926. ISSN 0129-1831, doi: 10.1142/S0129183108012595.

Rymaszewska J, Wojtynska R, Biecek P, Kustrzycki W and Dzielak K (2008). “Depression and anxiety of CABG patients - long-term follow-up.” EUROPEAN PSYCHIATRY, 23(2), pp. S63. ISSN 0924-9338, doi: 10.1016/j.eurpsy.2008.01.230.

Sieradzki A, Okolow T, Adamowski T, Kiejna A, Trafidlo E, Weyde W, Biecek P and Morawska N (2008). “Sleep disorders in patients with end-stage renal disease. Preliminary report.” EUROPEAN PSYCHIATRY, 23(2), pp. S280-S281. ISSN 0924-9338, doi: 10.1016/j.eurpsy.2008.01.591.

Mackiewicz P, Biecek P, Mackiewicz D, Kiraga J, Baczkowski K, Sobczynski M and Cebrat S (2008). “Optimisation of asymmetric mutational pressure and selection pressure around the universal genetic code.” In Bubak M, Dongarra J, VanAlbada G and Sloot P (eds.), COMPUTATIONAL SCIENCE - ICCS 2008, PT 3, volume 5103 series LECTURE NOTES IN COMPUTER SCIENCE, pp. 100-109. Hewlett Packard Co; Intel Corp; Qumak Sekom AM \& IBM; Microsoft Corp; ATM SA; Elsevier; Springer. ISBN 978-3-540-69388-8, 8th International Conference on Computational Science, Cracow, POLAND, JUN 23-25, 2008.

2007

Baierl A, Futschik A, Bogdan M and Biecek P (2007). “Locating multiple interacting quantitative trait loci using robust model selection.” COMPUTATIONAL STATISTICS \& DATA ANALYSIS, 51(12), pp. 6423-6434. ISSN 0167-9473, doi: 10.1016/j.csda.2007.02.010.

Kiraga J, Mackiewicz P, Mackiewicz D, Kowalczuk M, Biecek P, Polak N, Smolarczyk K, Dudek MR and Cebrat S (2007). “The relationships between the isoelectric point and: length of proteins, taxonomy and ecology of organisms.” BMC GENOMICS, 8. ISSN 1471-2164, doi: 10.1186/1471-2164-8-163.

Cebrat S, Biecek P, Bonkbwsk K and Kula M (2007). “White noise and synchronization shaping the age structure of the human population - art. no. 66020O.” In Bezrukov S (ed.), Noise and Fluctuations in Biological, Biophysical, and Biomedical Systems, volume 6602 series PROCEEDINGS OF THE SOCIETY OF PHOTO-OPTICAL INSTRUMENTATION ENGINEERS (SPIE), pp. O6020. SPIE; European Opt Soc; SIOF; SPIE Europe. ISBN 978-0-8194-6739-3, doi: 10.1117/12.725551, Conference on Noise and Fluctuations in Biological, Biophysical, and Biomedical Systems, Florence, ITALY, MAY 21-23, 2007.

Cebrat S, Bonkowska K and Biecek P (2007). “Pandemics and immune memory in the noisy Penna model - art. no. 66020P.” In Bezrukov S (ed.), Noise and Fluctuations in Biological, Biophysical, and Biomedical Systems, volume 6602 series PROCEEDINGS OF THE SOCIETY OF PHOTO-OPTICAL INSTRUMENTATION ENGINEERS (SPIE), pp. P6020. SPIE; European Opt Soc; SIOF; SPIE Europe. ISBN 978-0-8194-6739-3, doi: 10.1117/12.725554, Conference on Noise and Fluctuations in Biological, Biophysical, and Biomedical Systems, Florence, ITALY, MAY 21-23, 2007.

Zawierta M, Biecek P, Waga W and Cebrat S (2007). “The role of intragenomic recombination rate in the evolution of population's genetic pool.” THEORY IN BIOSCIENCES, 125(2), pp. 123-132. ISSN 1431-7613, doi: 10.1016/j.thbio.2007.02.002.

2006

Biecek P and Cebrat S (2006). “Immunity in the noisy Penna model.” INTERNATIONAL JOURNAL OF MODERN PHYSICS C, 17(12), pp. 1823-1829. ISSN 0129-1831, doi: 10.1142/S0129183106010133.

Biecek P and Cebrat S (2006). “Fluctuations, environment, mutations accumulation and ageing.” INTERNATIONAL JOURNAL OF MODERN PHYSICS C, 17(6), pp. 923-931. ISSN 0129-1831, doi: 10.1142/S0129183106009369.

Wagner W, Walczak-Drzewiecka A, Slusarczyk A, Biecek P, Rychlewski L and Dastych J (2006). “Fluorescent Cell Chip a new in vitro approach for immunotoxicity screening.” TOXICOLOGY LETTERS, 162(1), pp. 55-70. ISSN 0378-4274, doi: 10.1016/j.toxlet.2005.10.017, 42nd Congress of the Association-of-European-Toxicologists/European-Societies-of-Toxicology, Cracow, POLAND, SEP 11-14, 2005.

2005

Bogdan M, Ghosh J, Doerge R, Biecek P, Baierl A, Futschik A and Frommlet F (2005). “Modified version of Bayesian Information criterion for localization of multiple interacting quantitative trait loci.” ANNALS OF HUMAN GENETICS, 69(6), pp. 765. ISSN 0003-4800, 33rd European Mathematical Genetics Meeting, Kremlin Bicetre, FRANCE, APR 01-02, 2005.

Wagner W, Walczak-Drzewiecka A, Slusarczyk A, Wyczolkowska J, Rychlewski L, Biecek P and Dastych J (2005). “The “fluorescent cell chip” technology as an emerging in vitro tool for immunotoxicants' fingerprint search.” TOXICOLOGY LETTERS, 158(1), pp. S95. ISSN 0378-4274.